Index

B

BaseDataSet (class in m2aia.Dataset) BatchGenerator (class in m2aia.Generators)

BatchSequence (class in m2aia.keras.KerasGenerators) bin_peaks() (in module m2aia.utils.binning)

C

CheckHandle() (m2aia.ImageIO.ImzMLReader method)

D

dir() (m2aia.ImageIO.ImzMLReader method)

G

get_library() (in module m2aia.Library) get_shared_lib_dependencies() (in module m2aia.Library) get_tolerance() (m2aia.Dataset.IonImageDataset method) GetArray() (m2aia.ImageIO.ImzMLReader method) GetImage() (m2aia.ImageIO.ImzMLReader method) GetIndexArray() (m2aia.ImageIO.ImzMLReader method) GetIndexImage() (m2aia.ImageIO.ImzMLReader method) GetIntensities() (m2aia.ImageIO.ImzMLReader method) getitems() (m2aia.Dataset.BaseDataSet method) (m2aia.Dataset.IonImageDataset method) (m2aia.Dataset.SpectrumDataset method) GetMaskArray() (m2aia.ImageIO.ImzMLReader method) GetMaskImage() (m2aia.ImageIO.ImzMLReader method) GetMaxSpectrum() (m2aia.ImageIO.ImzMLReader method) GetMeanSpectrum() (m2aia.ImageIO.ImzMLReader method) GetMetaData() (m2aia.ImageIO.ImzMLReader method) GetNormalizationArray() (m2aia.ImageIO.ImzMLReader method)

GetNormalizationImage() (m2aia.ImageIO.ImzMLReader method) GetNumberOfSpectra() (m2aia.ImageIO.ImzMLReader method) GetOrigin() (m2aia.ImageIO.ImzMLReader method) GetParametersAsFormattedString() (m2aia.ImageIO.ImzMLReader method) GetShape() (m2aia.ImageIO.ImzMLReader method) GetSizeInBytesOfYAxisType() (m2aia.ImageIO.ImzMLReader method) GetSpacing() (m2aia.ImageIO.ImzMLReader method) GetSpectra() (m2aia.ImageIO.ImzMLReader method) GetSpectrum() (m2aia.ImageIO.ImzMLReader method) GetSpectrumDepth() (m2aia.ImageIO.ImzMLReader method) GetSpectrumPosition() (m2aia.ImageIO.ImzMLReader method) GetSpectrumType() (m2aia.ImageIO.ImzMLReader method) GetTolerance() (m2aia.ImageIO.ImzMLReader method) GetXAxis() (m2aia.ImageIO.ImzMLReader method) GetXAxisDepth() (m2aia.ImageIO.ImzMLReader method) GetYDataType() (m2aia.ImageIO.ImzMLReader method) group_binning() (in module m2aia.utils.binning) grouper_strict() (in module m2aia.utils.binning)

I

ImzMLReader (class in m2aia.ImageIO)

IonImageDataset (class in m2aia.Dataset)

L

Load() (m2aia.ImageIO.ImzMLReader method)

load_library_dependencies_recursively() (in module m2aia.Library) load_m2aia_library() (in module m2aia.Library)

M

m2aia module m2aia.Dataset module m2aia.Generators module m2aia.ImageIO module m2aia.keras module m2aia.keras.KerasGenerators module m2aia.Library module m2aia.torch module m2aia.utils module m2aia.utils.binning module

m2aia.utils.peaks module m2aia.utils.volcano module make_buffered_image() (m2aia.Dataset.IonImageDataset method) module m2aia m2aia.Dataset m2aia.Generators m2aia.ImageIO m2aia.keras m2aia.keras.KerasGenerators m2aia.Library m2aia.torch m2aia.utils m2aia.utils.binning m2aia.utils.peaks m2aia.utils.volcano

N

name() (m2aia.ImageIO.ImzMLReader method)

noise_mad() (in module m2aia.utils.peaks)

O

on_epoch_end() (m2aia.Generators.BatchGenerator method) (m2aia.keras.KerasGenerators.BatchSequence method)

P

path() (m2aia.ImageIO.ImzMLReader method)

pick_peaks() (in module m2aia.utils.peaks) prepare_environment() (in module m2aia)

S

SetBaselineCorrection() (m2aia.ImageIO.ImzMLReader method) SetIntensityTransformation() (m2aia.ImageIO.ImzMLReader method) SetNormalization() (m2aia.ImageIO.ImzMLReader method) SetPooling() (m2aia.ImageIO.ImzMLReader method)

SetSmoothing() (m2aia.ImageIO.ImzMLReader method) SetTolerance() (m2aia.ImageIO.ImzMLReader method) SpectrumDataset (class in m2aia.Dataset) SpectrumIterator() (m2aia.ImageIO.ImzMLReader method) SpectrumRandomBatchIterator() (m2aia.ImageIO.ImzMLReader method)

V

validate_environment() (in module m2aia)

volcano_data() (in module m2aia.utils.volcano) volcano_plot_data() (in module m2aia.utils.volcano)

W

WriteContinuousCentroidImzML() (m2aia.ImageIO.ImzMLReader method)