Index

B

BaseDataSet (class in m2aia.Dataset) BatchGenerator (class in m2aia.Generators)

BatchSequence (class in m2aia.keras.KerasGenerators) bin_peaks() (in module m2aia.utils.binning)

C

CheckHandle() (m2aia.ImageIO.ImzMLReader method), [1]

D

dir() (m2aia.ImageIO.ImzMLReader method), [1]

F

find_nearest_indices() (m2aia.Dataset.SpectrumDataset method)

find_subrange_indices() (m2aia.Dataset.SpectrumDataset method)

G

get_library() (in module m2aia.Library) get_shared_lib_dependencies() (in module m2aia.Library) get_tolerance() (m2aia.Dataset.IonImageDataset method) GetArray() (m2aia.ImageIO.ImzMLReader method), [1] GetImage() (m2aia.ImageIO.ImzMLReader method), [1] GetIndexArray() (m2aia.ImageIO.ImzMLReader method), [1] GetIndexImage() (m2aia.ImageIO.ImzMLReader method), [1] GetIntensities() (m2aia.ImageIO.ImzMLReader method), [1] getitems() (m2aia.Dataset.BaseDataSet method) (m2aia.Dataset.IonImageDataset method) (m2aia.Dataset.SpectrumDataset method) GetMaskArray() (m2aia.ImageIO.ImzMLReader method), [1] GetMaskImage() (m2aia.ImageIO.ImzMLReader method), [1] GetMaxSpectrum() (m2aia.ImageIO.ImzMLReader method), [1] GetMeanSpectrum() (m2aia.ImageIO.ImzMLReader method), [1] GetMetaData() (m2aia.ImageIO.ImzMLReader method), [1] GetNormalizationArray() (m2aia.ImageIO.ImzMLReader method), [1]

GetNormalizationImage() (m2aia.ImageIO.ImzMLReader method), [1] GetNumberOfSpectra() (m2aia.ImageIO.ImzMLReader method), [1] GetOrigin() (m2aia.ImageIO.ImzMLReader method), [1] GetParametersAsFormattedString() (m2aia.ImageIO.ImzMLReader method), [1] GetShape() (m2aia.ImageIO.ImzMLReader method), [1] GetSizeInBytesOfYAxisType() (m2aia.ImageIO.ImzMLReader method), [1] GetSpacing() (m2aia.ImageIO.ImzMLReader method), [1] GetSpectra() (m2aia.ImageIO.ImzMLReader method), [1] GetSpectrum() (m2aia.ImageIO.ImzMLReader method), [1] GetSpectrumDepth() (m2aia.ImageIO.ImzMLReader method), [1] GetSpectrumPosition() (m2aia.ImageIO.ImzMLReader method), [1] GetSpectrumType() (m2aia.ImageIO.ImzMLReader method), [1] GetTolerance() (m2aia.ImageIO.ImzMLReader method), [1] GetXAxis() (m2aia.ImageIO.ImzMLReader method), [1] GetXAxisDepth() (m2aia.ImageIO.ImzMLReader method), [1] GetYDataType() (m2aia.ImageIO.ImzMLReader method), [1] group_binning() (in module m2aia.utils.binning) grouper_strict() (in module m2aia.utils.binning)

I

ImzMLReader (class in m2aia.ImageIO), [1]

IonImageDataset (class in m2aia.Dataset)

L

Load() (m2aia.ImageIO.ImzMLReader method), [1]

load_library_dependencies_recursively() (in module m2aia.Library) load_m2aia_library() (in module m2aia.Library)

M

m2aia module m2aia.Dataset module m2aia.Generators module m2aia.ImageIO module, [1] m2aia.keras module m2aia.keras.KerasGenerators module m2aia.Library module m2aia.utils module m2aia.utils.binning module

m2aia.utils.peaks module m2aia.utils.volcano module make_buffered_image() (m2aia.Dataset.IonImageDataset method) module m2aia m2aia.Dataset m2aia.Generators m2aia.ImageIO, [1] m2aia.keras m2aia.keras.KerasGenerators m2aia.Library m2aia.utils m2aia.utils.binning m2aia.utils.peaks m2aia.utils.volcano

N

name() (m2aia.ImageIO.ImzMLReader method), [1]

noise_mad() (in module m2aia.utils.peaks)

O

on_epoch_end() (m2aia.Generators.BatchGenerator method) (m2aia.keras.KerasGenerators.BatchSequence method)

P

path() (m2aia.ImageIO.ImzMLReader method), [1]

pick_peaks() (in module m2aia.utils.peaks) prepare_environment() (in module m2aia)

S

SetBaselineCorrection() (m2aia.ImageIO.ImzMLReader method), [1] SetIntensityTransformation() (m2aia.ImageIO.ImzMLReader method), [1] SetNormalization() (m2aia.ImageIO.ImzMLReader method), [1] SetPooling() (m2aia.ImageIO.ImzMLReader method), [1]

SetSmoothing() (m2aia.ImageIO.ImzMLReader method), [1] SetTolerance() (m2aia.ImageIO.ImzMLReader method), [1] SpectrumDataset (class in m2aia.Dataset) SpectrumIterator() (m2aia.ImageIO.ImzMLReader method), [1] SpectrumRandomBatchIterator() (m2aia.ImageIO.ImzMLReader method), [1]

V

validate_environment() (in module m2aia)

volcano_data() (in module m2aia.utils.volcano) volcano_plot_data() (in module m2aia.utils.volcano)

W

WriteContinuousCentroidImzML() (m2aia.ImageIO.ImzMLReader method), [1]